PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g03340.1.p
Common NameBRADI_4g03340, LOC100826089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 210aa    MW: 21491.2 Da    PI: 9.9119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g03340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-05130152123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk F +   L  H r+H
  Bradi4g03340.1.p 130 HVCNVCGKAFATGQALGGHKRRH 152
                       79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-46894IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-106993No hitNo description
PfamPF139121.4E-127195IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7647198IPR007087Zinc finger, C2H2
SMARTSM003550.397193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-10125152No hitNo description
Gene3DG3DSA:3.30.160.602.8E-5128152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-11129154IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388130152IPR007087Zinc finger, C2H2
SMARTSM003550.061130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAVEPVLEAA APVLPSPSPA TSASASAPAS KLEQRGSKRK RSRQMAPSEE EQLALWLLML  60
ARGDREQERL HGCSVCGKAF ASYQALGGHK ASHRKPPSLP APAAGADEQQ PQATAASSGS  120
ASGGSGGRAH VCNVCGKAFA TGQALGGHKR RHYDGTIGSA AAKGTAKAAA NRPGFDLNLP  180
ALPEVVVEAD RQDEVSSSLE KKPRLIITA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757984.11e-149PREDICTED: zinc finger protein 1-like
TrEMBLI1IH261e-149I1IH26_BRADI; Uncharacterized protein
STRINGBRADI4G03340.11e-148(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.15e-31zinc finger of Arabidopsis thaliana 6